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  • Adversarial Attack and Defense on Graph Data: A Survey

    Lichao Sun, Yingtong Dou, Carl Yang, Kai Zhang, Ji Wang, Philip S. Yu, Lifang He, Bo Li

    IEEE Transactions on Knowledge and Data Engineering · 2022

    This review is intended to provide an overall landscape of more than 100 papers on adversarial attack and defense strategies for graph data, and establish a unified formulation encompassing most graph adversarial learning models.

    409
  • Heterogeneous Network Representation Learning: A Unified Framework With Survey and Benchmark

    Carl Yang, Yuxin Xiao, Yu Zhang, Yizhou Sun, Jiawei Han

    IEEE Transactions on Knowledge and Data Engineering · 2020

    This work aims to provide a unified framework to deeply summarize and evaluate existing research on heterogeneous network embedding (HNE), and provides a generic paradigm for the systematic categorization and analysis over the merits of various existing HNE algorithms.

    324
  • Bridging Collaborative Filtering and Semi-Supervised Learning

    Carl Yang, Lanxiao Bai, Chao Zhang, Quan Yuan, Jiawei Han

    ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD) · 2017

    This work proposes to devise a general and principled SSL (semi-supervised learning) framework, to alleviate data scarcity via smoothing among neighboring users and POIs, and treat various context by regularizing user preference based on context graphs.

    316
  • Domain Specialization as the Key to Make Large Language Models Disruptive: A Comprehensive Survey

    Chen Ling, Xujiang Zhao, Jiaying Lu, Chengyuan Deng, Can Zheng, Junxiang Wang, Tanmoy Chowdhury, Yun Li, +16 more

    ACM Computing Surveys · 2025

    A systematic taxonomy is proposed that categorizes the LLM domain-specialization techniques based on the accessibility to LLMs and summarizes the framework for all the subcategories as well as their relations and differences to each other.

    311
  • BrainGB: A Benchmark for Brain Network Analysis With Graph Neural Networks

    Hejie Cui, Wei Dai, Yanqiao Zhu, Xuan Kan, Antonio Aodong Chen Gu, Joshua Lukemire, Liang Zhan, Lifang He, +2 more

    IEEE Transactions on Medical Imaging · 2022

    This work presents BrainGB, a benchmark for brain network analysis with GNNs, a standardizes the process by summarizing brain network construction pipelines for both functional and structural neuroimaging modalities and modularizing the implementation of GNN designs.

    244
  • FBNETGEN: Task-aware GNN-based fMRI Analysis via Functional Brain Network Generation

    Xuan Kan, Hejie Cui, Joshua Lukemire, Ying Guo, Carl Yang

    PubMed · 2022

    FBNETGEN is developed, a task-aware and interpretable fMRI analysis framework via deep brain network generation which learns to transform raw time-series features into task-oriented brain networks and provides unique interpretations by highlighting prediction-related brain regions.

    161
  • GAD-NR: Graph Anomaly Detection via Neighborhood Reconstruction

    Amit Roy, Juan Shu, Jia Li, Carl Yang, Olivier Elshocht, Jeroen Smeets, Pan Li

    ACM International Conference on Web Search and Data Mining (WSDM) · 2024

    The proposed \proj is a new variant of GAE that incorporates neighborhood reconstruction for graph anomaly detection, and excels at detecting all three types of anomalies across the datasets, demonstrating its comprehensive anomaly detection capabilities.

    154
  • GuardAgent: Safeguard LLM Agents by a Guard Agent via Knowledge-Enabled Reasoning

    Xiang, Zhen, Linzhi Zheng, Yanjie Li, Junyuan Hong, Qinbin Li, Xie Han, Jiawei Zhang, Zidi Xiong, +4 more

    arXiv · 2024

    This paper proposes GuardAgent, the first LLM agent as a guardrail to other LLM agents, and proposes two novel benchmarks: an EICU-AC benchmark for assessing privacy-related access control for healthcare agents and a Mind2Web-SC benchmark for safety evaluation for web agents.

    146
  • EHRAgent: Code Empowers Large Language Models for Few-shot Complex Tabular Reasoning on Electronic Health Records

    Wenqi Shi, Ran Xu, Yuchen Zhuang, Yue Yu, Jieyu Zhang, Hang Wu, Yuanda Zhu, Joyce C. Ho, +2 more

    Conference on Empirical Methods in Natural Language Processing (EMNLP) · 2024

    This work proposes EHRAgent, a large language model (LLM) agent empowered with accumulative domain knowledge and robust coding capability that enables autonomous code generation and execution to facilitate clinicians in directly interacting with EHRs using natural language.

    127
  • On Positional and Structural Node Features for Graph Neural Networks on Non-attributed Graphs

    Hejie Cui, Zijie Lu, Li Pan, Carl Yang

    Proceedings of the ... ACM International Conference on Information & Knowledge Management · 2022

    This paper points out the two types of artificial node features, i.e., positional and structural node features and provides insights on why each of them is more appropriate for certain tasks, thereby leading to a practical guideline on the choices between different artificial nodes features for GNNs on non-attributed graphs.

    116
  • Conditional Structure Generation through Graph Variational Generative Adversarial Nets

    Carl Yang, Peiye Zhuang, Wenhan Shi, Alan Luu, Pan Li

    neural information processing systems · 2019

    This work forms the novel problem of conditional structure generation, and proposes a novel unified model of graph variational generative adversarial nets (CondGen) to handle the intrinsic challenges of flexible context-structure conditioning and permutation-invariant generation.

    114
  • Interpretable Graph Neural Networks for Connectome-Based Brain Disorder Analysis

    Hejie Cui, Wei Dai, Yanqiao Zhu, Xiaoxiao Li, Lifang He, Carl Yang

    Lecture notes in computer science · 2022

    103
  • I Know You'll Be Back

    Carl Yang, Xiaolin Shi, Luo Jie, Jiawei Han

    ACM SIGKDD International Conference on Knowledge Discovery & Data Mining (KDD) · 2018

    This paper develops ClusChurn, a systematic two-step framework for interpretable new user clustering and churn prediction, based on the intuition that properuser clustering can help understand and predict user churn.

    93
  • Understanding Structural Vulnerability in Graph Convolutional Networks

    Liang Chen, Jintang Li, Qibiao Peng, Yang Liu, Zibin Zheng, Carl Yang

    Proceedings of the Thirtieth International Joint Conference on Artificial Intelligence · 2021

    This work theoretically and empirically demonstrate that structural adversarial examples can be attributed to the non-robust aggregation scheme (i.e., the weighted mean) of GCNs, and takes advantage of the breakdown point which can quantitatively measure the robustness of aggregation schemes.

    78
  • 4SDrug: Symptom-based Set-to-set Small and Safe Drug Recommendation

    Yanchao Tan, Chengjun Kong, Leisheng Yu, Pan Li, Chaochao Chen, Xiaolin Zheng, Vicki Hertzberg, Carl Yang

    ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD) · 2022

    A novel framework of Symptom-based Set-to-set Small and Safe drug recommendation (4SDrug) is proposed, which outperforms all baselines in most effectiveness measures, while yielding the smallest sets of recommended drugs and 26.83% DDI rate reduction from the ground-truth data.

    77
  • When Do GNNs Work: Understanding and Improving Neighborhood Aggregation

    Yiqing Xie, Sha Li, Carl Yang, Raymond Chi-Wing Wong, Jiawei Han

    International Joint Conference on Artificial Intelligence · 2020

    This paper proposes novel metrics that quantitatively measure these two circumstances and integrate them into an Adaptive-layer module and shows that allowing for node-specific aggregation degrees have significant advantage over current GNNs.

    75
  • Subgraph Federated Learning with Missing Neighbor Generation

    Ke Zhang, Carl Yang, Xiaoxiao Li, Lichao Sun, Siu Ming Yiu

    arXiv · 2021

    74
  • A review on knowledge graphs for healthcare: Resources, applications, and promises

    Hejie Cui, Jiaying Lu, Ran Xu, Shi-Yu Wang, Wenjing Ma, Yue Yu, Shaojun Yu, Xuan Kan, +9 more

    Journal of Biomedical Informatics · 2025

    HKGs have emerged as a powerful tool for structuring medical knowledge, with broad applications across biomedical research, clinical decision-making, and public health, highlighting the potential of combining knowledge graphs with advanced machine learning models for healthcare transformation.

    73
  • A Survey on Graph Structure Learning: Progress and Opportunities

    Yanqiao Zhu, Weizhi Xu, Jinghao Zhang, Yuanqi Du, Jieyu Zhang, Qiang Liu, Carl Yang, Shu Wu

    arXiv · 2021

    69
  • SAIS: Supervising and Augmenting Intermediate Steps for Document-Level Relation Extraction

    Yuxin Xiao, Zecheng Zhang, Yuning Mao, Carl Yang, Jiawei Han

    Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies (NAACL-HLT) · 2022

    This work proposes to explicitly teach the model to capture relevant contexts and entity types by supervising and augmenting intermediate steps (SAIS) for RE by assessing model uncertainty, which boosts the performance via evidence-based data augmentation and ensemble inference while reducing the computational cost.

    66
  • Structure-Enhanced Heterogeneous Graph Contrastive Learning

    Yanqiao Zhu, Yichen Xu, Hejie Cui, Carl Yang, Qiang Liu, Shu Wu

    Society for Industrial and Applied Mathematics eBooks · 2022

    A novel method to generate multiple semantic views for HGs and advocate the explicit use of structure embedding, which enriches the model with local structural patterns of the underlying HGs, so as to better mine true and hard negatives for GCL.

    63
  • Federated Graph Classification over Non-IID Graphs

    Han Xie, Jing Ma, Li Xiong, Carl Yang

    arXiv · 2021

    60
  • Heterogeneous Network Representation Learning: Survey, Benchmark, Evaluation, and Beyond

    Carl Yang, Yuxin Xiao, Yu Zhang, Yizhou Sun, Jiawei Han

    arXiv · 2020

    This work aims to provide a unified framework to deeply summarize and evaluate existing research on heterogeneous network embedding (HNE), and provides a generic paradigm for the systematic categorization and analysis over the merits of various existing HNE algorithms.

    60
  • Joint Embedding of Structural and Functional Brain Networks with Graph Neural Networks for Mental Illness Diagnosis

    Yanqiao Zhu, Hejie Cui, Lifang He, Lichao Sun, Carl Yang

    Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society · 2022

    This work develops a novel multiview GNN model which takes advantage of the message passing scheme by propagating messages based on degree statistics and brain region connectivities and employs contrastive learning for multimodal fusion.

    57
  • Node, Motif and Subgraph: Leveraging Network Functional Blocks Through Structural Convolution

    Carl Yang, Mengxiong Liu, Vincent Wenchen Zheng, Jiawei Han

    IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM) · 2018

    56

Show all 245 works

Publication data from OpenAlex, with missing venues and authors filled in from Crossref; citation counts are the higher of OpenAlex and Semantic Scholar, last synced 2026-10-14. One-sentence summaries under some papers are written by Semantic Scholar’s model. Citation counts may be lower than on Google Scholar, which indexes more sources.

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